Computational Phylogenomics Lab @ ANU

Selected publications

1. Maximum likelihood pandemic-scale phylogenetics
   N. De Maio, P. Kalaghatgi, Y. Turakhia, R. Corbett-Detig, B.Q. Minh, N. Goldman
   Nature Genetics (2023)

2. AliSim: A fast and versatile phylogenetic sequence simulator for the genomic era
   N. Ly-Trong, S. Naser-Khdour, R. Lanfear, B.Q. Minh
   Molecular Biology and Evolution msac092 (2022)

3. nQMaker: Estimating Time Nonreversible Amino Acid Substitution Models
   C.C. Dang, B.Q. Minh, H. McShea, J. Masel, J.E. James, L.S. Vinh, R. Lanfear
   Systematic Biology 71:1110-1123 (2022)

4. Primate phylogenomics uncovers multiple rapid radiations and ancient interspecific introgression
   D. Vanderpool, B.Q. Minh, R. Lanfear, D. Hughes, S. Murali, R.A. Harris, M. Raveendran, D.M. Muzny, M.S. Hibbins, R.J. Williamson, R.A. Gibbs, K.C. Worley, J. Rogers, M.W. Hahn
   PLOS Biology 18:e3000954 (2020)

   

5. IQ-TREE 2: New models and efficient methods for phylogenetic inference in the genomic era
   B.Q. Minh, H.A. Schmidt, O. Chernomor, D. Schrempf, M.D. Woodhams, A. von Haeseler, R. Lanfear
   Molecular Biology and Evolution 37:1530-1534 (2020)